Package: rKOMICS 1.2

Manon Geerts

rKOMICS: Minicircle Sequence Cluster (MSC) Analyses

It establishes a critical framework to manipulate, explore and extract biologically relevant information from mitochondrial minicircle assemblies in tens to hundreds of samples simultaneously and efficiently. This should facilitate research that aims to develop new molecular markers for identifying species-specific minicircles, or to study the ancestry of parasites for complementary insights into their evolutionary history.

Authors:Frederik Van den Broeck [aut], Manon Geerts [aut, cre]

rKOMICS_1.2.tar.gz
rKOMICS_1.2.zip(r-4.5)rKOMICS_1.2.zip(r-4.4)rKOMICS_1.2.zip(r-4.3)
rKOMICS_1.2.tgz(r-4.5-any)rKOMICS_1.2.tgz(r-4.4-any)rKOMICS_1.2.tgz(r-4.3-any)
rKOMICS_1.2.tar.gz(r-4.5-noble)rKOMICS_1.2.tar.gz(r-4.4-noble)
rKOMICS_1.2.tgz(r-4.4-emscripten)rKOMICS_1.2.tgz(r-4.3-emscripten)
rKOMICS.pdf |rKOMICS.html✨
rKOMICS/json (API)

# Install 'rKOMICS' in R:
install.packages('rKOMICS', repos = c('https://geertsmanon.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/geertsmanon/rkomics/issues

Datasets:

On CRAN:

Conda:

3.00 score 2 scripts 233 downloads 1 mentions 14 exports 132 dependencies

Last updated 4 years agofrom:a51234afd2. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 10 2025
R-4.5-winNOTEMar 10 2025
R-4.5-macNOTEMar 10 2025
R-4.5-linuxNOTEMar 10 2025
R-4.4-winNOTEMar 10 2025
R-4.4-macNOTEMar 10 2025
R-4.4-linuxNOTEMar 10 2025
R-4.3-winNOTEMar 10 2025
R-4.3-macNOTEMar 10 2025

Exports:%>%msc.depthmsc.heatmapmsc.lengthmsc.matrixmsc.pcamsc.qualitymsc.richnessmsc.seqsmsc.similaritymsc.subsetmsc.ucpreprocessread.uc

Dependencies:abindapebackportsbase64encBiocGenericsbootbroombslibcachemcarcarDatacirclizecliclueclustercodetoolscolorspaceComplexHeatmapcorrplotcowplotcpp11crayoncrosstalkdendextendDerivdigestdoBydoParalleldplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustfontawesomeforeachFormulafsgenericsGetoptLongggplot2ggpubrggrepelggsciggsignifGlobalOptionsgluegridExtragtablehighrhtmltoolshtmlwidgetshttpuvIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpngpolynompromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreformulasreshape2rjsonrlangrmarkdownrstatixS4Vectorssassscalesscatterplot3dshapeSparseMstringistringrsurvivaltibbletidyrtidyselecttinytexutf8vctrsviridisviridisLitewithrxfunyaml

Application example

Rendered fromexample.Rnwusingutils::Sweaveon Mar 10 2025.

Last update: 2021-09-12
Started: 2021-09-12